Lista de Ferramentas de Bioinformática
(Diferença entre revisões)
(→Análises de sequências e alinhamento) |
(→Análises metagenômicas) |
||
| Linha 36: | Linha 36: | ||
==Análises metagenômicas== | ==Análises metagenômicas== | ||
| − | ;MEGAN | + | ;[http://ab.inf.uni-tuebingen.de/software/megan/ MEGAN] |
:MEtaGenome ANalyzer | :MEtaGenome ANalyzer | ||
| − | ;JCVI Metarep | + | ;[http://ab.inf.uni-tuebingen.de/software/megan/ JCVI Metarep] |
:Análises metagenômicas (necessita de sequencias anotadas) | :Análises metagenômicas (necessita de sequencias anotadas) | ||
| − | ;JCVI Manatee | + | ;[http://manatee.sourceforge.net/ JCVI Manatee] |
:Software de anotação de sequências | :Software de anotação de sequências | ||
| − | ;JCVI Annotation service | + | ;[http://www.jcvi.org/cms/research/projects/annotation-service/ JCVI Annotation service] |
:Serviço de anotação de sequências | :Serviço de anotação de sequências | ||
| − | ;JCoast | + | ;[http://www.jcoast.net/ JCoast] |
| − | ;GenDB | + | ;[http://www.cebitec.uni-bielefeld.de/groups/brf/software/gendb_info/index.html GenDB] |
| − | ;MG-RAST | + | ;[http://metagenomics.anl.gov/ MG-RAST] |
:The Metagenomics RAST (online) | :The Metagenomics RAST (online) | ||
| − | ;MegX | + | ;[http://www.megx.net/portal/content/content.html MegX] |
:Portal for marine ecological genomics | :Portal for marine ecological genomics | ||
| − | ;JGI GEBA | + | ;[http://www.jgi.doe.gov/programs/GEBA/index.html JGI GEBA] |
| − | ;IMG GEBA | + | ;[http://img.jgi.doe.gov/cgi-bin/geba/main.cgi IMG GEBA] |
| − | ;NBC | + | ;[http://nbc.ece.drexel.edu/index.php NBC] |
:Naïve Bayesian Classification tool | :Naïve Bayesian Classification tool | ||
| − | ;WebCarma (login) | + | ;[http://webcarma.cebitec.uni-bielefeld.de/cgi-bin/webcarma.cgi WebCarma] ([http://webcarma.cebitec.uni-bielefeld.de/cgi-bin/webcarma.cgi?PAGE=uploadData&NEW=1&SESSIONKEY=c0a3ccf4700e2e40e7bd47f7ee30b1194ab674296657c2481066384c630eefac&EMAIL=leonardonormando@gmail.com login]) |
| − | ;PhyolOTU | + | ;[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1001061 PhyolOTU] |
:A High-Throughput Procedure Quantifies Microbial Community Diversity and Resolves Novel Taxa from Metagenomic Data | :A High-Throughput Procedure Quantifies Microbial Community Diversity and Resolves Novel Taxa from Metagenomic Data | ||
| − | ;CAMERA 2.0 | + | ;[https://portal.camera.calit2.net/gridsphere/gridsphere?cid=home CAMERA 2.0] |
| − | ;IMG MER | + | ;[https://img.jgi.doe.gov/cgi-bin/mer/main.cgi IMG MER] |
| − | ;GreenGenes | + | ;[http://greengenes.lbl.gov/cgi-bin/nph-index.cgi GreenGenes] |
:The greengenes web application provides access to the current and comprehensive 16S rRNA gene sequence alignment for browsing, blasting, probing, and downloading. | :The greengenes web application provides access to the current and comprehensive 16S rRNA gene sequence alignment for browsing, blasting, probing, and downloading. | ||
| − | ;MetaPhyller | + | ;[http://metaphyler.cbcb.umd.edu/ MetaPhyller] |
:Estimating Bacterial Composition from Metagenomic Sequences (linux) | :Estimating Bacterial Composition from Metagenomic Sequences (linux) | ||
| − | ;WebMGA | + | ;[http://weizhong-lab.ucsd.edu/metagenomic-analysis/ WebMGA] |
:Ótimo framework com várias ferramentas online, como ORF_finder e fragGeneScan | :Ótimo framework com várias ferramentas online, como ORF_finder e fragGeneScan | ||
| − | ;FragGeneScan | + | ;[http://omics.informatics.indiana.edu/FragGeneScan/ FragGeneScan] |
:Orf finder tool | :Orf finder tool | ||
Edição de 13h23min de 31 de agosto de 2011
Tabela de conteúdo |
Aplicativos online e standalone
- Expert Protein Analysis System
- Integrated Microbial Genomes
- List of biological databases
- Wiki com uma lista de banco de dados biológicos
- Python Bioinformatics Course
- GMOD
- Phylogeny.fr
- Ferramentas on-line de alinhamento e criação de árvores
- iTol
- Interative Tree of Life
- t-Align
- Compara réplicas de T-RFLP
- ARB
- Orphelia
- Metagenomic ORF finder
- MEGA
- ModelTest
- Teste de modelos de alinhamento
Análises de sequências e alinhamento
- Embl Tools
- NCBI Tools
- EsyPred3D
- Predição de estruturas protéicas 3D
- Bioperl
- Dependências BIO para PERL
- Blast NCBI Online
- Blast do NCBI
- CodonCode Aligner
- Clustal
- Alinhamento múltiplo de forma local
Análises metagenômicas
- MEGAN
- MEtaGenome ANalyzer
- JCVI Metarep
- Análises metagenômicas (necessita de sequencias anotadas)
- JCVI Manatee
- Software de anotação de sequências
- JCVI Annotation service
- Serviço de anotação de sequências
- JCoast
- GenDB
- MG-RAST
- The Metagenomics RAST (online)
- MegX
- Portal for marine ecological genomics
- JGI GEBA
- IMG GEBA
- NBC
- Naïve Bayesian Classification tool
- WebCarma (login)
- PhyolOTU
- A High-Throughput Procedure Quantifies Microbial Community Diversity and Resolves Novel Taxa from Metagenomic Data
- CAMERA 2.0
- IMG MER
- GreenGenes
- The greengenes web application provides access to the current and comprehensive 16S rRNA gene sequence alignment for browsing, blasting, probing, and downloading.
- MetaPhyller
- Estimating Bacterial Composition from Metagenomic Sequences (linux)
- WebMGA
- Ótimo framework com várias ferramentas online, como ORF_finder e fragGeneScan
- FragGeneScan
- Orf finder tool
Blogs e Tutoriais
- NCBI News
- Biowisdom
- LabInfo LNCC
- Spatial Analisys in Macroecology
- Sabia Metagenome
- The Bionformatics Blog
- What’s hot in Bioinformatics
- Bionformatics Tools
- Lista de blogs
- Blogs de bioinformática
- http://stackoverflow.com/questions/2051319/bioinformatics-resources
- Learning R
- As the title says, tips to learn R
- Helix Soft
- Do mesmos desenvolvedores do wikiPathways
- N Saunders
- SciVee
- Science Youtube
- Bioinformatics Zen
- Família Phylip de programas
- Aprendendo R
- Learn R
- Curso R
- Introdução à estatística básica com R
- Applied statistics for bioinformatics using R
- TINN-R
- SciViews
- GUI for R
- Bioconductor
- Diversos pacotes de análise Bioinformatica
