Lista de Ferramentas de Bioinformática

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Edição de 13h46min de 31 de agosto de 2011

Expert Protein Analysis System: ExPASy is the new SIB Bioinformatics Resource Portal which provides access to scientific databases and software tools in different areas of life sciences
Integrated Microbial Genomes System: The Integrated Microbial Genomes (IMG) is a genome browsing and annotation system
List of biological databases: Wiki com uma lista de banco de dados biológicos
Python Bioinformatics Course
GMOD: GMOD is the Generic Model Organism Database project, a collection of open source software tools for creating and managing genome-scale biological databases
Phylogeny.fr: Ferramentas on-line de alinhamento e criação de árvores
iTol: Interative Tree of Life
t-Align: Compara réplicas de T-RFLP
ARB
Orphelia: Metagenomic ORF finder
MEGA
ModelTest: Teste de modelos de alinhamento
Spatial Analisys in Macroecology
Sabia Metagenome
Família Phylip de programas
LabInfo LNCC

MEGAN: MEtaGenome ANalyzer
JCVI Metarep: Análises metagenômicas (necessita de sequencias anotadas)
JCVI Manatee: Software de anotação de sequências
JCVI Annotation service: Serviço de anotação de sequências
JCoast
GenDB
MG-RAST: The Metagenomics RAST (online)
MegX: Portal for marine ecological genomics
JGI GEBA
IMG GEBA
NBC: Naïve Bayesian Classification tool
WebCarma (login)
PhyolOTU: A High-Throughput Procedure Quantifies Microbial Community Diversity and Resolves Novel Taxa from Metagenomic Data
CAMERA 2.0
IMG MER
GreenGenes: The greengenes web application provides access to the current and comprehensive 16S rRNA gene sequence alignment for browsing, blasting, probing, and downloading.
MetaPhyller: Estimating Bacterial Composition from Metagenomic Sequences (linux)
WebMGA: Ótimo framework com várias ferramentas online, como ORF_finder e fragGeneScan
FragGeneScan: Orf finder tool

Learning R: As the title says, tips to learn R
Helix Soft: Do mesmos desenvolvedores do wikiPathways
N Saunders
SciVee: Science Youtube
Bioinformatics Zen
Aprendendo R: Learn R; Curso R; Introdução à estatística básica com R; Applied statistics for bioinformatics using R; TINN-R
SciViews: GUI for R
Bioconductor: Diversos pacotes de análise Bioinformatica

@@ Linha 2: / Linha 2: @@
 ;[http://www.expasy.org/ Expert Protein Analysis System]
-;[http://www.expasy.org/ Integrated Microbial Genomes]
+:ExPASy is the new SIB Bioinformatics Resource Portal which provides access to scientific databases and software tools in different areas of life sciences
+;[http://img.jgi.doe.gov/ Integrated Microbial Genomes System]
+:The Integrated Microbial Genomes (IMG) is a genome browsing and annotation system
 ;[http://en.wikipedia.org/wiki/List_of_biological_databases List of biological databases]
 :Wiki com uma lista de banco de dados biológicos
 ;[http://intro-prog-bioinfo-2010.wikispaces.com/ Python Bioinformatics Course]
 ;[http://gmod.org/wiki/Main_Page GMOD]
+:GMOD is the Generic Model Organism Database project, a collection of open source software tools for creating and managing genome-scale biological databases
 ;[http://www.phylogeny.fr/version2_cgi/index.cgi Phylogeny.fr]
 :Ferramentas on-line de alinhamento e criação de árvores