Lista de Ferramentas de Bioinformática
(Diferença entre revisões)
(→Análises metagenômicas) |
(→Análises metagenômicas) |
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| Linha 67: | Linha 67: | ||
:Portal for marine ecological genomics | :Portal for marine ecological genomics | ||
;[http://www.jgi.doe.gov/programs/GEBA/index.html JGI GEBA] | ;[http://www.jgi.doe.gov/programs/GEBA/index.html JGI GEBA] | ||
| − | + | :The GEBA project is aimed at systematically filling in the gaps in sequencing along the bacterial and archaeal branches of the tree of life. | |
;[http://img.jgi.doe.gov/cgi-bin/geba/main.cgi IMG GEBA] | ;[http://img.jgi.doe.gov/cgi-bin/geba/main.cgi IMG GEBA] | ||
:Integrated Microbial Genomes | :Integrated Microbial Genomes | ||
| Linha 79: | Linha 79: | ||
:Community Cyberinfrastructure for Advanced Microbial Ecology Research & Analysis | :Community Cyberinfrastructure for Advanced Microbial Ecology Research & Analysis | ||
;[https://img.jgi.doe.gov/cgi-bin/mer/main.cgi IMG MER] | ;[https://img.jgi.doe.gov/cgi-bin/mer/main.cgi IMG MER] | ||
| + | :IMG Metagenomics | ||
;[http://greengenes.lbl.gov/cgi-bin/nph-index.cgi GreenGenes] | ;[http://greengenes.lbl.gov/cgi-bin/nph-index.cgi GreenGenes] | ||
:The greengenes web application provides access to the current and comprehensive 16S rRNA gene sequence alignment for browsing, blasting, probing, and downloading. | :The greengenes web application provides access to the current and comprehensive 16S rRNA gene sequence alignment for browsing, blasting, probing, and downloading. | ||
Edição de 14h08min de 31 de agosto de 2011
Tabela de conteúdo |
Aplicativos online e standalone
- Expert Protein Analysis System
- ExPASy is the new SIB Bioinformatics Resource Portal which provides access to scientific databases and software tools in different areas of life sciences
- Integrated Microbial Genomes System
- The Integrated Microbial Genomes (IMG) is a genome browsing and annotation system
- List of biological databases
- Wiki com uma lista de banco de dados biológicos
- Python Bioinformatics Course
- QB3 Python Bioinformatics Course 2010
- GMOD
- GMOD is the Generic Model Organism Database project, a collection of open source software tools for creating and managing genome-scale biological databases
- Phylogeny.fr
- Ferramentas on-line de alinhamento e criação de árvores
- iTol
- Interative Tree of Life
- t-Align
- Compara réplicas de T-RFLP
- ARB
- The ARB software is a graphically oriented package comprising various tools for sequence database handling and data analysis.
- Orphelia
- Metagenomic ORF finder
- MEGA
- MEGA is an integrated tool for conducting automatic and manual sequence alignment, inferring phylogenetic trees, mining web-based databases, estimating rates of molecular evolution, inferring ancestral sequences, and testing evolutionary hypotheses.
- ModelTest
- Teste de modelos de alinhamento
- Spatial Analisys in Macroecology
- SAM (Spatial Analysis in Macroecology) is a program designed as a package of tools for spatial statistical analysis, mainly for applications in Surface Pattern Spatial Analysis.
- Sabia Metagenome
- LNCC Sabia Metagenomic tool
- LabInfo LNCC
- Bioinformatics Lab (Labinfo) of the National Laboratory of Scientific Computation of the Ministry of Science and Technology (MCT) of Brazil
Análises de sequências e alinhamento
- Embl Tools
- Bioinformatics Tools for Sequence Similarity & Analysis Searching
- NCBI Tools
- EsyPred3D
- Predição de estruturas protéicas 3D
- Bioperl
- BioPerl is a toolkit of perl modules useful in building bioinformatics solutions in Perl.
- Blast NCBI Online
- NCBI Basic Local Alignment Search Tool
- CodonCode Aligner
- CodonCode Aligner is an easy-to-use program for sequence assembly, contig editing, and mutation detection.
- Clustal
- Multiple alignment of nucleic acid and protein sequences
Análises metagenômicas
- MEGAN
- MEtaGenome ANalyzer
- JCVI Metarep
- Análises metagenômicas (necessita de sequencias anotadas)
- JCVI Manatee
- Software de anotação de sequências
- JCVI Annotation service
- Serviço de anotação de sequências
- JCoast
- JCoast is a next-generation software solution for the exploration, mining and comparison of your genome and metagenome projects. Based on a set of predicted and automatically annotated ORFs (a genome or metagenome) it acts as a window into these preprocessed data which does not only allow to view the initial results but also facilitates improved annotation and in-depth data analysis.
- GenDB
- GenDB is a genome annotation system for prokaryotic genomes.
- MG-RAST
- The Metagenomics RAST (online)
- MegX
- Portal for marine ecological genomics
- JGI GEBA
- The GEBA project is aimed at systematically filling in the gaps in sequencing along the bacterial and archaeal branches of the tree of life.
- IMG GEBA
- Integrated Microbial Genomes
- NBC
- Naïve Bayesian Classification tool
- WebCarma (login)
- WebCARMA is a web-based system for the functional and taxonomic analysis of metagenomic DNA sequences.
- PhyolOTU
- A High-Throughput Procedure Quantifies Microbial Community Diversity and Resolves Novel Taxa from Metagenomic Data
- CAMERA 2.0
- Community Cyberinfrastructure for Advanced Microbial Ecology Research & Analysis
- IMG MER
- IMG Metagenomics
- GreenGenes
- The greengenes web application provides access to the current and comprehensive 16S rRNA gene sequence alignment for browsing, blasting, probing, and downloading.
- MetaPhyller
- Estimating Bacterial Composition from Metagenomic Sequences (linux)
- WebMGA
- Ótimo framework com várias ferramentas online, como ORF_finder e fragGeneScan
- FragGeneScan
- Orf finder tool
Blogs e Tutoriais
- NCBI News
- Biowisdom
- The Bionformatics Blog
- What’s hot in Bioinformatics
- Bionformatics Tools
- Lista de blogs
- Blogs de bioinformática
- Blue Collar bioinformatics
- BioCS
- biology as computational science
- Finch Talk
- OBF
- Open source bioinfomatics
- Learning R
- As the title says, tips to learn R
- Helix Soft
- Do mesmos desenvolvedores do wikiPathways
- N Saunders
- SciVee
- Science Youtube
- Bioinformatics Zen
- Aprendendo R
- Learn R
- Curso R
- Introdução à estatística básica com R
- Applied statistics for bioinformatics using R
- TINN-R
- SciViews
- GUI for R
- Bioconductor
- Diversos pacotes de análise Bioinformatica
